Detailed information of matrix profile UN0477.1

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Profile summary

Name: ZF-C2H2-10
Matrix ID: UN0477.1
Class: C2H2 zinc finger factors
Family:
Collection: UNVALIDATED
Taxon: Urochordates
Species: Ciona intestinalis
Data Type: SELEX
Validation:
Uniprot ID: Q4H2K8  
Source: 31267468
Comment: No family information available.

Sequence logo

Frequency matrix

         
A [ 263 317 304 252 289 283 181 951 22 849 100 932 618 856 84 303 326 187 632 192 394 294 ]
C [ 285 254 254 274 307 346 598 11 58 55 39 20 121 28 216 486 279 341 149 129 136 261 ]
G [ 229 237 176 243 239 177 73 24 25 63 822 22 138 62 41 96 157 107 91 118 152 158 ]
T [ 223 193 266 231 166 194 148 14 895 33 38 26 123 53 660 116 238 366 128 561 318 287 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0477.1 UN0477 1 ZF-C2H2-10 Ciona intestinalis
C2H2 zinc finger factors
UN0477.2 UN0477 2 ZF-C2H2-10 Ciona intestinalis
C2H2 zinc finger factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: