Detailed information of matrix profile MA0578.1

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Profile summary
Name: SPL8
Matrix ID: MA0578.1
Class: C3H(C),C2HC zinc fingers factors
Family: SBP
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: SELEX
Validation: 16095614
Uniprot ID: Q8GXL3  
Source:
Comment: No family information available.

Sequence logo

Frequency matrix

         
A [ 11 11 9 10 10 3 0 0 30 0 6 10 5 13 10 11 ]
C [ 1 0 4 1 6 10 0 0 0 30 12 7 8 5 3 6 ]
G [ 4 6 6 4 4 2 30 0 0 0 1 0 1 0 0 0 ]
T [ 14 13 11 15 10 15 0 30 0 0 11 13 16 12 17 13 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0578.1 MA0578 1 SPL8 Arabidopsis thaliana
SBP C3H(C),C2HC zinc fingers factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: