Detailed information of matrix profile UN0868.1

  1. Home
  2. Matrix > UN0868.1
This profile is unvalidated. Please help our curators to validate profiles by performing experiments and/or by pointing to literature.

Community curation

Your email will only be used by our team to contact you.

If your contribution is significant, we will acknowledge it in the manuscript of the JASPAR upcoming release. We do not share your information with any third parties.

Profile summary

Name: LBD16
Matrix ID: UN0868.1
Class: Other C4 zinc finger-type factors
Family: LBD
Collection: UNVALIDATED
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation:
Uniprot ID: Q9SLB7  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 36 26 103 85 680 745 900 721 240 176 165 0 5 ]
C [ 693 973 115 190 71 8 15 48 228 566 636 1 261 ]
G [ 256 0 641 515 183 153 73 0 95 178 41 976 673 ]
T [ 13 0 140 210 65 93 11 230 436 78 156 21 60 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0868.1 UN0868 1 LBD16 Arabidopsis thaliana
LBD Other C4 zinc finger-type factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: