Detailed information of matrix profile UN0707.1

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Profile summary

Name: hlh-29
Matrix ID: UN0707.1
Class: Basic helix-loop-helix factors (bHLH)
Family: Hairy-related factors
Collection: UNVALIDATED
Taxon: Nematodes
Species: Caenorhabditis elegans
Data Type: PBM
Validation:
Uniprot ID: Q19917  
Source: 19632181
Comment: Class and TF information inffered based on sequence similarity search using DELTA-BLAST within Nr. database and limiting the search to vertebrates

Sequence logo

Frequency matrix

         
A [ 818 0 0 0 412 0 0 0 ]
C [ 0 1000 0 1000 0 0 0 0 ]
G [ 182 0 1000 0 588 0 1000 583 ]
T [ 0 0 0 0 0 1000 0 417 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0707.1 UN0707 1 hlh-29 Caenorhabditis elegans
Hairy-related factors Basic helix-loop-helix factors (bHLH)
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: