Detailed information of matrix profile UN0480.1

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Profile summary

Name: ZF-C2H2-6
Matrix ID: UN0480.1
Class: C2H2 zinc finger factors
Family:
Collection: UNVALIDATED
Taxon: Urochordates
Species: Ciona intestinalis
Data Type: SELEX
Validation:
Uniprot ID: Q4H2H1  
Source: 31267468
Comment: No family information available.

Sequence logo

Frequency matrix

         
A [ 247 318 259 268 336 320 195 95 52 19 44 888 897 33 49 527 740 336 196 231 261 344 ]
C [ 210 197 198 182 146 185 226 22 75 23 819 83 53 178 197 191 49 172 237 169 193 177 ]
G [ 274 257 313 264 222 277 252 838 21 16 38 18 25 28 33 164 131 242 158 236 244 141 ]
T [ 270 227 230 286 297 219 327 45 853 943 99 11 25 761 721 118 80 250 409 364 303 338 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0480.1 UN0480 1 ZF-C2H2-6 Ciona intestinalis
C2H2 zinc finger factors
UN0480.2 UN0480 2 ZF-C2H2-6 Ciona intestinalis
C2H2 zinc finger factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: